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Title: Myf5 haploinsufficiency reveals distinct cell fate potentials for adult skeletal muscle stem cells
Authors
: Gayraud-Morel B, Chrétien F, Jory A, Sambasivan R, Negroni E, Flamant P, Soubigou G, Coppée JY, Di Santo J, Cumano A, Mouly V, Tajbakhsh S
Date
: 2012
Publication Details
: J Cell Sci. 2012 Apr 1;125(Pt 7):1738-49. Epub 2012 Feb 24

Title: A Comprehensive Model of the Spatio-Temporal Stem Cell and Tissue Organisation in the Intestinal Crypt
Authors
: Buske P, Galle J, Barker N, Aust G, Clevers H, Loeffler M
Date
: 6th January 2011
Publication Details
: PLoS Comput Biol 7(1): e1001045. doi:10.1371/journal.pcbi.1001045

Title: Microenvironmental Reprogramming of Thymic Epithelial Cells to Skin Mulitipotent Cells
Authors
: Bonfanti P, Claudinot S, Amici AW, Farley A, Blackburn CC, Barrandon Y
Date
: August 2010
Publication Details
: Nature 19 Aug 2010: 466, 978-982

Title: Interactions between Notch- and hypoxia-induced transcriptomes in embryonic stem cells
Authors
: Main H, Lee KL, Yang H, Edgren H, Sahlgren C, Jin S, Kallioniemi O, Poellinger L, Lim B and Lendahl U
Date
: 2010
Publication Details
: Exp Cell Res. 2010 May 15;316(9):1610-24. Epub 2009 Dec 23, PMID 20034489

Title: The developmental dismantling of pluripotency is reversed by ectopic Oct4 expression
Authors
: Osorno R, Tsakiridis A, Wong F, Cambray N, Economou C, Wilkie R, Blin G, Scotting PJ, Chambers I, Wilson V
Date
: 2012
Publication Details
: Development 2012 139(13): 2288-2298

Title: IFNá activates dormant haematopoietic stem cells in vivo
Authors
: Essers MA, Offner S, Blanco-Bose WE, Waibler Z, Kalinke U, Duchosal MA, Trumpp A
Date
: 2009
Publication Details
: Nature 458. 2009 Apr 16;458 (7240):904-8

Title: Developmental stage-specific contribution of LGR5+ cells to basal and luminal epithelial lineages in the postnatal mammary gland
Authors
: de Visser KE, Ciampricotti M, Michalak EM, Wei-Min Tan D, Speksnijder EN, Hau C-S, Clevers H, Barker N, Jonkers J
Date
: 2012
Publication Details
: The Journal of Pathology 2011 May; 224(1): 56-66

Title: Towards a quantitative understanding of stem cell–niche interaction: Experiments, models, and technologies
Authors
: Roeder I, Loeffler M, Glauche I (and other participants)
Date
: March 2011
Publication Details
: Blood Cells Mol Dis. 2011 Apr 15;46(4):308-17. Epub 2011 Mar 29

Title: Tumor-initiating cells are not enriched in cisplatin-surviving BRCA1;p53-deficient mammary tumor cells in vivo
Authors
: Pajic M, Kersbergen A, van Diepen F, Pfauth A, Jonkers J, Borst P, Rottenberg S
Date
: 2010
Publication Details
: Cell Cycle. 2010 Sep 15;9(18):3780-91. Epub 2010 Sep 13

Title: The earliest thymic T cell progenitors sustain B cell and myeloid lineage potential
Authors
: Luc S, Luis TC, Boukarabila H, Macaulay IC, Buza-Vidas N, Bouriez-Jones T, Lutteropp M, Woll PS, Loughran SJ, Mead AJ, Hultquist A, Brown J, Mizukami T, Matsuoka S, Ferry H, Anderson K, Duarte S, Atkinson S, Soneji S, Domanski A, Farley A, Sanjuan-Pla A, Carella C, Patient R, de Bruijn M, Enver T, Nerlov C, Blackburn C, Godin I, Jacobsen SEW
Date
: 2012
Publication Details
: Nature Immunology 2012 Feb 19;13(4): 611-624

Title: Genome-wide mapping of Myc binding and gene regulation in serum-stimulated fibroblasts
Authors
: Perna D, Fagà G, Verrecchia A, Gorski MM, Barozzi I, Narang V, Khng J, Lim KC, Sung W-K. Sanges R, Stupka E, Oskarsson T, Trumpp A, Wei C-L, Müller H, Amati B
Date
: 2012
Publication Details
: Oncogene (2012) 31, 1695–1709; doi:10.1038/onc.2011.359

Title: The combination of valproic acid and lithium delays hematopoietic stem/progenitor cell differentiation
Authors
: Walasek MA, Bystrykh LV, van den Boom V, Olthof S, Ausema A, Ritsema M, Huls G, de Haan G and van Os R
Date
: 2012
Publication Details
: Blood 2012 Mar 29; 119(13): 3050-59

Title: Foxn1 regulates lineage progression in cortical and medullary thymic epithelial cells but is dispensable for medullary sublineage divergence
Authors
: Nowell CS, Bredenkamp N, Tetelin S, Jin X, Tischner C, Vaidya H, Sheridan JM, stenhouse FH, Heussen R, Smith AJ, Blackburn CC

Date: November 2011
Publication Details
: PLoS Genet 7(11): e1002348

Title: Changes in primary lymphoid organs with aging
Authors
: Chinn IK, Blackburn CC, Manley NR, Sempowski GD
Date
: 2012
Publication Details
: Seminars in Immunology 2012, 24(5): 309–320

Title: Lgr5 marks cycling, yet long-lived, hair follicle stem cells
Authors
: Jaks V, Barker N, Kasper M, van Es JH, Snippert HJ, Clevers H, Toftgård R
Date
: November 2011
Publication Details
: Nat Genet. 2008 Nov;40(11):1291-9

Title: Counting stem cells: Methodological constraints
Authors
: Bystrykh LV, Verovskaya E, Zwart E, Broekhuis M, de Haan G
Date
: 2012
Publication Details
: Nature Methods 2012 May 30;9(6): 567-574

Title: Skeletal muscle stem cells adopt a dormant state post mortem and retain regenerative capacity
Authors
: Latil M, Rocheteau P, Châtre L, Sanulli S, Mémet S, Ricchetti M, Tajbakhsh S, Chrétien F
Date
: 2012
Publication Details
: Nature Communications 2012, 3(903)

Title: The bone marrow stem cell niche grows up: mesenchymal stem cells and macrophages move in
Authors
: Ehninger A, Trumpp A
Date
: March 2011
Publication Details
: J Exp Med. 2011 Mar 14;208(3):421-8

Title: Pax3:Foxc2 Reciprocal Repression in the Somite Modulates Muscular versus Vascular Cell Fate Choice in Multipotent Progenitors
Authors
: Lagha M, Brunelli S, Messina G, Cumano A, Kume T, Relaix F, Buckingham ME
Date
: 2009
Publication Details
: Developmental Cell. 17(6): 892-899

Title: Pax3 regulation of FGF signaling affects the progression of embryonic progenitor cells into the myogenic program
Authors
: Lagha M, Kormish JD, Rocancourt D, Manceau M, Epstein JA, Zaret KS, Relaix F, Buckingham ME
Date
: 2008
Publication Details
: Genes & Development, 22, 1828-1837

Title:GATA-2 regulates granulocyte-macrophage progenitor cell function
Authors
:Rodrigues NP, Boyd AS, Fugazza C, May GE, Guo Y, Tipping AJ, Scadden DT, Vyas P, Enver T
Date
:2008
Publication Details
: Blood December 15, 2008 vol. 112 no. 13 4862-4873

Title: Nanog is the Gateway to the Pluripotent Ground State
Authors
: Silva J, Nichols J, Theunissen TW, Guo G, van Oosten A, Barrandon O, Wray J, Yamanaka S, Chambers I, Smith A
Date
: 2009
Publication Details
: Cell 138, 722–737, August 21, 2009

Title: Inducible gene and shRNA expression in resident hematopoietic stem cells in vivo
Authors
: Laurenti E, Barde I, Verp S, Offner, S, Wilson A, Quenneville S, Wiznerowicz M, Macdonald, HR, Trono D, Trumpp A
Date
: August 2010
Publication Details
: Stem Cells 28, 1390-1398

Title: The transcriptional foundation of pluripotency
Authors
: Chambers I, Tomlinson SR
Date
: 2009
Publication Details
: Development 136, 2311-2322 (2009) doi:10.1242/dev.024398

Title: Hes1 Is a Critical but Context-Dependent Mediator of Canonical Notch Signaling in Lymphocyte Development and Transformation
Authors
: Wendorff AA, Koch U, Wunderlich K, Wirth S, Dubey C, Brüning JC, MacDonald HR, Radtke F
Date
: November 2010
Publication Details
: Immunity 18 Nov 2010; 33(5):671-84

Title: Hematopoietic Stem Cell Function and Survival Depend on c-Myc and N-Myc Activity
Authors: Laurenti E, Varnum-Finney B, Wilson A, Ferrero I, Blanco-Bose WE, Ehninger A, Knoepfler PS, Cheng PF, MacDonald HR, Eisenman RN, Bernstein ID, Trumpp A
Date: 2008
Publication Details: Cell Stem Cell, Volume 3, Issue 6, 611-624, 4 December 2008

Title: Pluripotent stem cells: private obsession and public expectation
Authors
: Smith A
Date
: 2010
Publication Details
: EMBO Mol Med. 2010 Apr;2(4):113-6

Title: Myc, Cdk2 and cellular senescence: Old players, new game
Authors
: Campaner S, Doni M, Verrecchia A, Fagà G, Bianchi L and Amati B
Date
: 2010
Publication Details
: Cell Cycle 2010 Sep 15; 9(18): 3655-61

Title: Towards understanding the role of cancer-associated inflammation in chemoresistance
Authors
: de Visser K, Jonkers J
Date
: 2009
Publication Details
: Curr Pharm Des. 2009;15(16):1844-53, PMID 19519427

Title: Correlation Patterns of Cellular Genealogies
Authors: Scherf N, Roeder I, Glauche I
Date: 2008
Publication Details: Proceedings of the Fifth International Workshop on Computational Systems Biology, WCSB 2008, Leipzig, Germany pp.161-164, ISBN 978-952-15-1988-8 ISSN 1456-2774

Title: An adult tissue-specific stem cell in its niche: A gene profiling analysis of in vivo quiescent and activated muscle satellite cells
Authors
: Pallafacchina G, François S, Regnault B, Czarny B, Dive V, Cumano A, Montarras D, Buckingham ME
Date
: 2009
Publication Details
: Stem Cell Research. Volume 4, Issue 2, March 2010, Pages 77–91

Title: The X-inactivation trans-activator Rnf12 is negatively regulated by pluripotency factors in embryonic stem cells
Authors
: Navarro P, Moffat M, Mullin NP, Chambers I
Date
: 2011
Publication Details
: Human Genetics 2011, 130(2): 255-264

Title: FACS Purification and Transcriptome Analysis of Drosophila Neural Stem Cells reveals a Role for Klumpfuss in Self-Renewal
Authors
: Berger C, Harzer H, Burkard TR, Steinmann J, van der Horst S, Laurenson A-S, Novatchkova M, Reichert H and Knoblich JA
Date
: 2012
Publication Details
: Cell Reports 2012; 2(2): 407-418

Title: Oct4 and LIF/Stat3 Additively Induce Krüppel Factors to Sustain Embryonic Stem Cell Self-Renewal
Authors
: Hall J, Guo G, Wray J, Eyres I, Nichols J, Grotewold L, Morfopoulou S, Humphreys P, Mansfield W, Walker R, Tomlinson S, Smith AG
Date
: 2009
Publication Details
: Cell Stem Cell. Volume 5, Issue 6. pp.597-609. DOI 10.1016/j.stem.2009.11.003

Title: Stem Cell Proliferation and Quiescence– Two Sides of the Same Coin
Authors
: Glauche I, Moore K, Horn K, Loeffler M, Roeder I
Date
: 2009
Publication Details
: PloS Comp. Biol. July 2009 doi:10.1371/journal.pcbi.1000447

Title: Muscle satellite cells are primed for myogenesis, but maintain quiescence with sequestration of Myf5 mRNA targeted by microRNA-31 in mRNP granules
Authors
: Crist CG, Montarras D, Buckingham M
Date
: 2012
Publication Details
: Cell Stem Cell 2012 Jul 6:11(1): 118-126

Title: Neuropotent self-renewing neural stem (NS) cells derived from mouse induced pluripotent stem (iPS) cells
Authors
: Onorati M, Camnasio S, Binetti M, Jung CB, Moretti A, Cattaneo E
Date
: March 2010
Publication Details
: Mol Cell Neurosci 43(3), 287-295

Title: Naive and Primed Pluripotent States
Authors
: Nichols J, Smith AG
Date
: 2009
Publication Details
: Cell Stem Cell. 4(6), 5 June 2009, pp 487–492

Title: Awakening dormant haematopoietic stem cells
Authors
: Trumpp A, Essers M, Wilson A
Date
: 2010
Publication Details
: Nat Rev Immunol. 2010 Mar;10(3):201-9, PMID 20182459

Title: Genetic Screen Identifies MicroRNA Cluster 99b/let-7e/125a as a Regulator of Primitive Hematopoietic Cells
Authors
: Gerrits A, Walasek MA, Olthof S, Weersing E, Ritsema M, Zwart E, van Os R, Bystrykh LV, de Haan G
Date
: 2012
Publication Details
: Blood 2012 Jan 12; 119(2): 377-387

Title: Preservation of positional identity in fetus-derived neural stem (NS) cells from different mouse central nervous system compartments
Authors
: Onorati M, Binetti M, Conti L, Camnasio S, Calabrese G, Albieri I, Di Febo F, Toselli M, Biella G, Martynoga B, Guillemot F, Consalez GG and Cattaneo E
Date
: Oct 2010
Publication Details
: Cell Mol Life Sci. 2011 May;68(10):1769-83. Epub 2010 Oct 28

Title: Hematopoietic Stem Cells Reversibly Switch from Dormancy to Self-Renewal during Homeostasis and Repair
Authors: Wilson A, Laurenti E, Oser GM, van der Wath RC, Blanco-Bose WE, Dunant C, Bockamp E, Liò P, MacDonald HR, Trumpp A
Date: 2008
Publication Details: CELL, 135: 1118-1129

Title: ZFP423 Coordinates Notch and BMP Signaling, Selectively Up-regulating Hes5 Gene Expression
Authors
: Masserdotti G, Badaloni A, Green YS, Croci L, Barili V, Bergamini G, Vetter ML, Consalez GG
Date
: October 2010
Publication Details
: J Biol Chem. 2010 Oct 1;285(40):30814-24. Epub 2010 Jun 14

Title: A genome-wide RNAi screen reveals MAP kinase phosphatases as key ERK pathway regulators during embryonic stem cell differentiation (IN PRESS , Oct 2012)
Authors
: Sharrocks A, Yang S-H, Kalkan T, Haslam C, Smith A
Date
: IN PRESS, Oct 2012
Publication Details
: PLoS Genetics

Title: Breaking the cell cycle of HSCs by p57 and friends
Authors
: Tesio M, Trumpp A
Date
: 2011
Publication Details
: Cell Stem Cell 2011, 9(3):187-192

Title: Lgr6 marks stem cells in the hair follicle that generate all cell lineages of the skin
Authors
: Snippert HJ, Haegebarth A, Kasper M, Jaks V, van Es JH, Barker N, van de Wetering M, van den Born M, Begthel H, Vries RG, Stange DE, Toftgård R, Clevers H
Date
: March 2010
Publication Details
: Science. 2010 Mar 12;327(5971):1385-9

Title: Coexistence of LMPP-like and GMP-like leukemia stem cells in acute myeloid leukemia.
Authors
: Goardon N, Marchi E, Atzberger A, Quek L, Schuh A, Soneji S, Woll P, Mead A, Alford KA, Rout R, Chaudhury S, Gilkes A, Knapper S, Beldjord K, Begum S, Rose S, Geddes N, Griffiths M, Standen G, Sternberg A, Cavenagh J, Hunter H, Bowen D, Killick S, Robinson L, Price A, Macintyre E, Virgo P, Burnett A, Craddock C, Enver T, Jacobsen SE, Porcher C, Vyas P
Date
: 2011
Publication Details
: Cancer Cell, 19(1):138-152

Title: Balancing dormant and self-renewing haematopoietic stem cells
Authors
: Wilson A, Laurenti E, Trumpp A
Date
: 2009
Publication Details
: Curr Opin Genet Dev. 2009 Oct; 19(5):461-8, Epub 2009 Oct 5, PMID 19811902

Title: Molecular coupling of Tsix regulation and pluripotency
Authors
: Navarro P, Oldfield A, Legoupi J, Festuccia N., Dubois A, Attia M, Rougeulle C, Chambers I, Avner P
Date
: November 2010
Publication Details
: Nature. 2010 Nov 18;468(7322):457-60

Title: Polycomb group proteins in hematopoietic stem cell aging and malignancies
Authors
: Klauke K, de Haan G
Date
: 2011
Publication Details
: International Journal of Hematology 2011 Jul;94(1): 11-23

Title: Stem cell: what’s in a name?
Authors
: Tajbakhsh S
Date
: 2009
Publication Details
: Nature Reports Stem Cells, Published online: 25 June 2009, doi:10.1038/ stemcells.2009.90

Title: Stem cell biology meets systems biology
Authors
: Roeder I, Radtke F
Date
: November 2009
Publication Details
: Development. 2009 Nov;136(21):3525-30

Title: Structure and function of the thymic microenvironment
Authors
: Manley NR, Richie ER, Blackburn CC, Condie BG, Sage J
Date
: 2011
Publication Details
: Frontiers in Bioscience 16, 2461-2477, June 1, 2011

Title: Inhibition of glycogen synthase kinase-3 alleviates Tcf3 repression of the pluripotency network and increases embryonic stem cell resistance to differentiation
Authors
: Wray J, Kalkan T, Gomez-Lopez S, Eckardt D, Cook A, Kemler R & Smith A
Date
: 19th June 2011
Publication Details
: Nature Cell Biology 13,838–845(2011)doi:10.1038/ncb2267

Title: BRCA1-deficient mammary tumor cells are dependent on EZH2 expression and sensitive to PCR2-inhibitor DZNep
Authors
: Puppe J, Drost R, Liu X, Joosse SA, Evers B, Cornelissen-Steijger P, Nederlof P, Yu Q, Jonkers J, van Lohuizen M, Pietersen AM
Date
: 2009
Publication Details
: Breast Cancer Research 2009, 11:R63 doi:10.1186/bcr2354

Title: Klf4 reverts developmentally programmed restriction of ground state pluripotency
Authors
: Guo G, Yang J, Nichols J, Hall JS, Eyres I, Mansfield B, Smith AG
Date
: 2009
Publication Details
: Development 136, 1063-1069

Title: Inferring combinatorial association logic networks in multimodal genome-wide screens
Authors
: de Ridder J, Gerrits A, Bot J, de Haan G, Reinders M, Wessels L
Date: June 2010
Publication Details
: Bioinformatics. 2010 Jun 15;26(12):i149-57

Title: FluidTracks - combining nonlinear image registration and active contours for cell tracking
Authors
: Scherf N, Ludborzs C, Thierbach K, Kuska J-P, Braumann U-D, Scheibe P, Pompe T, Glauche I, Roeder I
Date
: 2012
Publication Details
: Bildverarbeitung fuer die Medizin 2012: Informatik aktuell 2012: 57-62

Title: Capturing epidermal stemness for regenerative medicine
Authors
: Barrandon Y, Grasset N, Zaffalon A, Claudinot S, Lathion Droz-Georget S, Nanba D, Rochat A
Date
: 2012
Publication Details
: Seminars in Cell & Developmental Biology 2012 Oct 2. pii:S1084-9521(12)00176-0

Title: Targeting leukemic stem cells by breaking their dormancy
Authors
: Essers MAG, Trumpp A
Date
: 2010
Publication Details
: Molecular Oncology Volume 4, Issue 5, October 2010, Pages 443–450

Title: A novel view on stem cell development: analysing the shape of cellular genealogies
Authors
: Glauche I, Lorenz R, Hasenclever D, I Roeder
Date
: 2009
Publication Details
: Cell Proliferation. Volume 42, Issue 2. pp 248–263

Title: Inferring rules of lineage commitment in haematopoiesis
Authors
: Pina C, Fugazza C, Tipping AJ, Brown J, Soneji S, Teles J, Peterson C, Enver T
Date
: 2012
Publication Details
: Nature Cell Biology 2012 Feb 19;14(3): 287-294

Title: Imaging, quantification and visualization of spatio-temporal patterning in mESC colonies under different culture conditions
Authors
: Scherf N, Herberg M, Thierbach K, Zerjatke T, Kalkan T, Humphreys P, Smith A, Glauche I, Roeder I
Date
: 2012
Publication Details
: Bioinformatics 2012 28(18): i556-i561

Title: The transcriptional and epigenomic foundations of ground state pluripotency
Authors
: Marks H, Menafra R, Kalkan T, Denissov S, Jones K, Hofemeister H, Nichols J, Kranz A, Stewart AF, Smith A, Stunnenberg HG
Date
: 2012
Publication Details
: Cell, Volume 149, Issue 3, 590-604, 27 April 2012

Title: The evolving concept of cancer and metastasis stem cells
Authors: Baccelli I and Trumpp A
Date: 2012
Publication Details: Journal of Cell Biology 2012 198(3): 281-293

Title: The tumour suppressor L(3)mbt inhibits neuroepithelial proliferation and acts on insulator elements
Authors
: Richter C, Oktaba K, Steinmann J, Müller J, Knoblich JA
Date
: 2011
Publication Details
: Nature Cell Biology 2011 13(9): 1029-39

Title: A Pax3/Dmrt2/Myf5 regulatory cascade functions at the onset of myogenesis
Authors
: Sato T, Rocancourt D, Marques L, Thorsteindottir S, Buckingham M
Date
: 2010
Publication Details
: PLoS Genetics 2010 Apr 1;6(4):e1000897, PMID 20368965

Title: A DNA transposon-based approach to functional screening in neural stem cells
Authors
: Albieri I, Onorati M, Calabrese G, Moiana A, Biasci D, Badaloni A, Camnasio S, Spiliotopoulos D, Ivics Z, Cattaneo E, Consalez GG
Date
: 3rd August 2010
Publication Details
: Journal of Biotechnology 150 (2010) 11–21

Title: The ground state of pluripotency
Authors
: Wray J, Kalkan T, Smith A
Date
: August 2010
Publication Details
: Biochem Soc Trans. 2010 Aug;38(4):1027-32

Title: Myf5 haploinsufficiency reveals distinct cell fate potentials for adult skeletal muscle stem cells
Authors
: Gayraud-Morel B, Chrétien F, Jory A, Sambasivan R, Negroni E, Flamant P, Soubigou G, Coppée JY, Di Santo J, Cumano A, Mouly V, Tajbakhsh S
Date
: 2012
Publication Details
: J Cell Sci. 2012 Apr 1;125(Pt 7):1738-49. Epub 2012 Feb 24

Title: Design principles of pluripotency
Authors
: Smith A
Date
: 2009
Publication Details
: EMBO Mol Med. 2009 Aug;1(5):251-4, PMID 20049727

Title: Dll1- and Dll4-Mediated Notch Signaling Is Required for Homeostasis of Intestinal Stem Cells
Authors
: Pellegrinet L, Rodilla V, Liu Z, Chen S, Koch U, Espinosa L, Kaestner K, Kopan R, Lewis J, Radtke F
Date: January 2011
Publication Details
: Volume 140, Issue 4 , Pages 1230-1240.e7, April 2011

Title: The par complex and integrins direct asymmetric cell division in adult intestinal stem cells
Authors
: Goulas S, Conder R, Knoblich JA
Date
: 2012
Publication Details
: Cell Stem Cell 2012, 11(4): 529-540

Title: What does the concept of the stem cell niche really mean today?
Authors
: Lander AD, Kimble J, Clevers H, Fuchs E, Montarras D, Buckingham M, Calof AL, Trumpp A and Oskarsson T
Date
: 2012
Publication Details
: BMC Biology 2012 Mar 9; 10:19

Title: Transcriptome analyses based on genetic screens for Pax3 myogenic targets in the mouse embryo
Authors
: Lagha M, Sato T, Regnault B, Cumano A, Zuniga A, Licht J, Relaix F, Buckingham M
Date
: December 2010
Publication Details
: BMC Genomics. 2010 Dec 8;11:696

Title: Hypo- and hyperactivated Notch signaling induce a glycolytic switch through distinct mechanisms
Authors
: Landor SK, Mutvei AP, Mamaeva V, Jin S, Busk M, Borra R, Grönroos TJ, Kronqvist P, Lendahl U, Sahlgren CM
Date
: 2011
Publication Details
: Proc Natl Acad Sci USA. Nov 15;108(46):18814-9

Title: Notch Signaling Regulates Platelet-Derived Growth Factor Receptor-Expression in Vascular Smooth Muscle Cells
Authors: Jin S, Hansson EM, Tikka S, Lanner F, Sahlgren C, Farnebo F, Baumann M, Kalimo H, Lendahl U
Date: 2008
Publication Details: Circulation Research 2008;102(12):1483-91

Note: an error resulted in FP6 project, EuroStemCell, being acknowledged in place of EuroSyStem in this paper. The work was not reported under EuroStemCell.

Title: Promotion of Reprogramming to Ground State Pluripotency by Signal Inhibition
Authors
: Silva J, Barrandon O, Nichols J, Kawaguchi J, Theunissen T, Smith AG
Date
:2008
Publication Details
: PLoS Biol 6(10): e253. doi:10.1371/journal.pbio.0060253

Title: Control of Notch ligand endocytosis by ligand-receptor interaction
Authors
: Hansson EM, Lanner F, Das D, Mutvei A, Marklund U, Ericson J, Farnebo F, Stumm G, Stenmark H, Andersson ER, Lendahl U
Date
: 2010 Sep 1
Publication Details
: J Cell Sci. 2010 Sep 1;123(Pt 17):2931-42

Title: Loss of cutaneous TSLP dependent immune responses skews the balance of inflammation from tumor-protective to tumor-promoting
Authors
: Di Piazza M, Nowell CS, Koch U, Durham AD, Radtke F
Date
: 2012
Publication Details
: Cancer Cell 2012, 22(4): 479-493

Title: CD133 (prominin) Negative Human Neural Stem Cells are Clonogenic and Tripotent
Authors
: Sun Y, Kong W, Falk A, Hu J, Pollard S, Smith AG
Date
: 2009
Publication Details
: PLoS One 4(5): e5498. doi:10.1371/journal.pone.0005498

Title: Muscle stem cell behaviour is modified by microRNA-27 regulation of Pax3 expression.
Authors
: Crist C, Montarras D, Pallafacchina G, Rocancourt D, Cumano A, Conway SJ, Buckingham ME
Date
: 2009
Publication Details
: Proc. Natl. Acad. Sci, USA, 106(32). pp.13383-13387

Title: Regulation of skeletal muscle stem cell behaviour by Pax3 and Pax7
Authors
: Lagha M, Sato T, Bajard L, Daubas P, Esner M, Montarras D, Relaix F, Buckingham M
Date
: 2008
Publication Details
: Cold Spring Harbor Symposium on Quantitative Biology 2008. 73: 307-315

Title: A tissue reconstruction model to study cancer cell-intrinsic and -extrinsic factors in mammary tumorigenesis
Authors
: Evers B, Speksnijder E, Schut E, Ciampricotti M, Smalley M, Derksen P, Jonkers J, de Visser K
Date
: 2010
Publication Details
: The Journal of Pathology 2010; 220(1): 34-44

Title: Stat3 activation is limiting for reprogramming to ground state pluripotency
Authors
: Yang J, van Oosten A, Theunissen T, Guo G, Silva J, Smith A
Date
: 2010
Publication Details
: Cell Stem Cell, Volume 7, Issue 3, 319-328, 3 September 2010

Title: Neurogenin 2 regulates progenitor cell cycle progression and Purkinje cell dendritogenesis in cerebellar development
Authors
: Florio M, Leto K, Muzio L, Tinterri A, Badaloni A, Croci L, Zordan P, Barili V, Albieri I, Guillemot F, Rossi F, Consalez GG
Date
: 2012
Publication Details
: Development 2012, 139(13): 2308-2320

Title: Domain-specific control of neurogenesis achieved through patterned regulation of Notch ligand expression
Authors
: Marklund U, Hansson EM, Sundström E, de Angelis MH, Przemeck GK, Lendahl U, Muhr J & Ericson J
Date
: 2010
Publication Details
: Development. 2010 Feb;137(3):437-45, PMID 20081190

Title: Self-organizing circuitry and emergent computation in mouse embryonic stem cells
Authors
: Halley J, Smith-Miles K, Winkler D, Kalkan T, Huang S, Smith A
Date
: 2012
Publication Details
: Stem Cell Research. 8(2), March 2012, Pages 324–33

Title: Chemotherapy response of spontaneous mammary tumours is independant of the adaptive immune system
Authors
: Ciampricotti M, Hau CS, Doornebal CW, Jonkers J, de Visser KE
Date
: 2012
Publication Details
: Nature Medicine 18,344–346(2012)doi:10.1038/nm.2652

Title: Cell plasticity in Caenorhabditis elegans: from induced to natural reprogramming
Authors
: Hajduskova M, Daniele T, Ahier A and Jarriault S
Date
: 2012
Publication Details
: Genesis 50(1) :1-17. doi: 10.1002/dvg.20806

Title: High-dimensional data analysis: Selection of variables, data compression and graphics – Application to gene expression
Authors
: Läuter J, Horn F, Rosolowski M, Glimm E
Date
: 2009
Publication Details
: Biometrical Journal Volume 51, Issue 2. pp.235-251

Title: Mouse inscuteable induces apical-basal spindle orientation to facilitate intermediate progenitor generation in the developing neocortex
Authors
: Postiglione M P, Jüschke C, Xie Y, Haas GA, Charalambous C, Knoblich JA
Date
: 2011
Publication Details
: Neuron 2011 Oct 20;72(2): 269-284

Title: Spatio-temporal Analysis of Unstained Cells In vitro
Authors
: Scherf N, Kuska JP, Braumann UD, Franke K, Pompe T, Röder I
Date
: 2009
Publication Details
: Bildverarbeitung für die Medizin 2009 - Anwendungen Proceedings des Workshops vom 22. bis 25. März 2009 in Heidelberg

Title: Computational Modeling of the Hematopoietic Erythroid-Myeloid Switch Reveals Insights into Cooperativity, Priming, and Irreversibility
Authors
: Chickarmane V, Enver T, Peterson C
Date
: 2009
Publication Details
: PLoS Comput Biol 5(1): e1000268. doi:10.1371/ journal.pcbi.1000268

Title: GeneProf: analysis of high-throughput sequencing experiments
Authors
: Halbritter F,Vaidya HJ, Tomlinson S
Date
: 2011
Publication Details
: Nature Methods 9,7–8(2012)doi:10.1038/nmeth.1809Published online 28 December 2011

Publications

Title: Development of metastatic HER2(+) breast cancer is independent of the adaptive immune system
Authors
: Ciampricotti M, Vrijland K, Hau CS, Pemovska T, Doornebal CW, Speksnijder EN, Wartha K, Jonkers J, de Visser KE
Date
: May 2011
Publication Details
: J Pathol. 2011 May;224(1):56-66

Title: A genome-wide screen in EpiSCs identifies Nr5a nuclear receptors as potent inducers of ground state pluripotency
Authors
: Guo G, Smith A
Date
: October 2010
Publication Details
: Development. 2010: 137, 3185-3192

Title: On the symmetry of siblings: automated single-cell tracking to quantify the behavior of hematopoietic stem cells in a biomimetic setup
Authors
: Scherf N, Franke K, Glauche I, Kurth I, Bornhauser M, Werner C, Pompe T, Roeder I
Date
: 2012
Publication Details
: Exp Hematol. 2012 Feb;40(2):119-30.e9. Epub 2011 Nov 13

Title: A Subpopulation of Adult Skeletal Muscle Stem Cells Retains All Template DNA Strands after Cell Division
Authors
: Rocheteau P, Gayraud-Morel B, Siegl-Cachedenier I, Blasco MA, Tajbakhsh S
Date
: January 2012
Publication Details
: Cell. Volume 148, Issues 1–2, 20 Jan 2012, Pages 112–25

Title: Therapy of chronic myeloid leukaemia can benefit from the activation of stem cells: simulation studies of different treatment combinations
Authors
: Glauche I, Horn K, Horn M, Thielecke L, Essers MAG, Trumpp A and Roeder I
Date
: April 2012
Publication Details
: British Journal of Cancer advance online publication. 26 April 2012; doi: 10.1038/bjc.2012.142

Title: Transcription factor heterogeneity and epiblast pluripotency
Authors
: Osorno R and Chambers I
Date
: 2011
Publication Details
: Philosophical Transactions of the Royal Society of London, Series B. 2011, 366(1575): 2230-37

Title: Numb Promotes an Increase in Skeletal Muscle Progenitor Cells in the Embryonic Somite
Authors
: Jory A, Le Roux I, Gayraud-Morel B, Rocheteau P, Cohen-Tannoudji M, Cumano A, Tajbakhsh S
Date
: 2009
Publication Details
: Stem Cells; Volume 27, Issue 11. pp.2769–2780

Title: Nanog Variability and Pluripotency Regulation of Embryonic Stem Cells - Insights from a Mathematical Model Analysis
Authors
: Glauche I, Herberg M, Roeder I
Date
: June 2010
Publication Details
: PLoS ONE 5(6): e11238

Title: Distinct regulatory cascades govern extraocular and pharyngeal arch muscle progenitor cell fates
Authors
: Sambasivan R, Gayraud-Morel B, Dumas G, Cimper C, Paisant S, Kelly RG and Tajbakhsh S
Date
: June 2009
Publication Details
: Developmental Cell 2009 June 16(6):810-821

Title: Numblike and Numb differentially affect p53 and Sonic Hedgehog signaling
Authors
: Liu L, Lanner F, Lendahl U, Das D
Date
: 2011
Publication Details
: Biochemical and Biophysical Research Communications 2011, 413(3): 426-431

Title: Estimating dormant and active hematopoietic stem cell kinetics through extensive modeling of bromodeoxyuridine label-retaining cell dynamics
Authors
: van der Wath RC, Wilson A, Laurenti E, Trumpp A, Liò P
Date
: 2009
Publication Details
: PLoS One. 2009 Sep 22;4(9):e6972, PMID 19771180

Title: Genome wide analysis of self-renewal in Drosophila neural stem cells by transgenic RNAi
Authors
: Neumüller RA, Richter C, Fischer A, Novatchkova M, Neumüller KG and Knoblich JA
Date
: May 2011
Publication Details
: Cell Stem Cell. 2011 May 6;8(5): 580-93

Title: Generation and characterization of a Notch1 signaling specific reporter mouse line
Authors
: Smith E, Claudinot S, Lehal R, Pellegrinet L, Barrandon Y, Radtke F
Date
: 2012
Publication Details
: Genesis 2012, 50(9): 700-710

Title: Recurrent transcriptional clusters in the genome of mouse pluripotent stem cells
Authors
: Skylaki S, Tomlinson SR
Date
: 2012
Publication Details
: Nucleic Acids Research Oct 2012, 40(19)e153

Title: A Critical Requirement for Notch Signaling in Maintenance of the Quiescent Skeletal Muscle Stem Cell State
Authors
: Mourikis P,Sambasivan R, Castel D, Rocheteau P, Bizzarro V, Tajbakhsh S
Date
: February 2012
Publication Details
: Stem Cells. Volume 30, Issue 2 page 243-52, Feb 2012

Title: Esrrb is a direct Nanog target gene that can substitute for Nanog function in pluripotent cells
Authors
: Festuccia N, Osorno R, Halbritter F, Karwacki-Neisius V, Navarro P, Colby D, Wong F, Yates A, Tomlinson SR, Chambers I
Date
: 2012
Publication Details
: Cell Stem Cell. 2012 11(4): 477-490

Title: Mouse inscuteable induces apical-basal spindle orientation to facilitate intermediate progenitor generation in the developing neocortex
Authors
: Postiglione M P, Jüschke C, Xie Y, Haas GA, Charalambous C, Knoblich JA
Date
: 2011
Publication Details
: Neuron 2011 Oct 20;72(2): 269-284

Title: Cellular barcoding tool for clonal analysis in the hematopoietic system
Authors
: Gerrits A, Dykstra B, Kalmykowa OJ, Klauke K, Verovskaya E, Broekhuis MJ, de Haan G, Bystrykh LV
Date
: April 2010
Publication Details
: Blood. 2010 Apr 1; 115(13):2610-8

Title: Interplay between FGF2 and BMP controls the self-renewal, dormancy and differentiation of rat neural stem cells
Authors
: Sun Y, Hu J, Zhou L, Pollard SM, and Smith A
Date
: June 2011
Publication Details
: J Cell Sci, Jun 1 2011:124(11);1867-1877

Title: Two sides of the Myc-induced DNA damage response: from tumor suppression to tumor maintenance
Authors
: Campaner S and Amati B
Date
: 2012
Publication Details
: Cell Division 2012; 7(1): 6

Title: Notch induces cyclin-D1-dependent proliferation during a specific temporal window of neural differentiation in ES cells
Authors
: Das D, Lanner F, Main H, Andersson ER, Bergmann O, Sahlgren C, Heldring N, Hermanson O, Hansson EM and Lendahl U
Date
: December 2010
Publication Details
: Developmental Biology (2010) 348, 153-166

Title: Tel1/ETV6 specifies blood stem cells through the agency of VEGF signaling
Authors
: Ciau-Uitz A, Pinheiro P, Gupta R, Enver T and Patient R
Date
: 2010
Publication Details
: Developmental Cell, 20 April 2010, 18(4): 569-578

Title: Cellular aging leads to functional heterogeneity of hematopoietic stem cells - A modelling perspective
Authors
: Glauche I, Thielecke L, Roeder I
Date
: March 2011
Publication Details
: Aging Cell. 2011, doi: 10.1111/j.1474-9726.2011.00692.x

Title: ‘Hearts and bones’: the ups and downs of ‘plasticity’ in stem cell biology
Authors
: Bonfanti P, Barrandon Y, Cossu G
Date
: 2012
Publication Details
: EMBO MOlecular Medicine 2012 May 4(5): 353-361

Title: Single-molecule transcript counting of stem-cell markers in the mouse intestine
Authors
: Itzkovitz S, Lyubimova A, Blat IC, Maynard M, van Es J, Lees J, Jacks T, Clevers H, van Oudenaarden A
Date
: 2011
Publication Details
: Nat Cell Biol. 2011 Nov 27;14(1):106-14. doi: 10.1038/ncb2384

Title: On the biomechanics of stem cell niche formation in the gut: Modelling growing organoids
Authors
: Buske P, Przybilla J, Loeffler M, Sachs N, Sato T, Clevers H, Galle J
Date
: 2012
Publication Details
: FEBS Journal. 2012 May 25. doi: 10.1111/j.1742-4658

Title: Molecular live cell bioimaging in stem cell research
Authors
: Endele M, Schroeder T
Date
: 2012
Publication Details
: Annals of the New York Academy of Sciences 2012, 1266(1): 18-27

Title: The combination of valproic acid and lithium delays hematopoietic stem/progenitor cell differentiation
Authors
: Walasek MA, Bystrykh LV, van den Boom V, Olthof S, Ausema A, Ritsema M, Huls G, de Haan G and van Os R
Date
: 2012
Publication Details
: Blood 2012 Mar 29; 119(13): 3050-59

Title: Pax7-expressing satellite cells are indispensable for adult skeletal muscle regeneration
Authors
: Sambasivan R, Yao R, Kissenpfennig A, Van Wittenberghe L, Paldi A, Gayraud-Morel B, Guenou H, Malissen B, Tajbakhsh S and Galy A
Date
: 2011
Publication Details
: Development 138, 3647-3656

Title: Lgr5(+ve) Stem Cells Drive Self-Renewal in the Stomach and Build Long-Lived Gastric Units In Vitro
Authors
: Barker N, Huch M, Kujala P, van de Wetering M, Snippert HJ, van Es JH, Sato T, Stange DE, Begthel H, van den Born M, Danenberg E, van den Brink S, Korving J, Abo A, Peters PJ, Wright N, Poulsom R, Clevers H
Date
: 2010
Publication Details
: Cell Stem Cell. Volume 6, Issue 1. DOI 10.1016/j.stem.2009.11.013

Title: Germline JAK2 mutation in a family with hereditary thrombocytosis
Authors
: Mead AJ, Rugless MJ, Jacobsen SE, Schuh A
Date
: 2012
Publication Details
: The New England Journal of Medicine. 2112;366: 967-969

Title: Regeneration of Epidermis from Adult Human Keratinocyte Stem Cells (IN PRESS, Oct 2012)
Authors
: Rochat A, Grasset N, Gorostidi F, Lathion S, Barrandon Y
Date
: IN PRESS, Oct 2012
Publication Details
: Handbook of Stem Cells 2nd ed

Title: Atopic dermatitis-like disease and associated lethal myeloproliferative disorder arise from loss of notch signaling in the murine skin
Authors
: Dumortier A, Durham AD, Di Piazza M, Vauclair S, Koch U, Ferrand G, Ferrero I, Demehri S, Song LL, FarrAG, Leonard WJ, Kopan R, Miele L, Hohl D, Finke D, Radtke F
Date
: February 2010
Publication Details
: PLoS One. 2010 Feb 18;5(2):e9258

Title: Expression Quantitative Trait Loci are Highly Sensitive to Cellular Differentiation State
Authors
: Gerrits A, Li Y, Tesson BM, Bystrykh LV, Weersing E, Dethmers-Ausema B, Dontje B, Wang X, Breitling R, Jansen RC, de Haan G
Date
: 2009
Publication Details
: Plos Genetics. Oct 2009; 5(10). doi:10.1371/ journal.pgen.1000692

Title: The Methyltransferase Set7/9 (Setd7) Is Dispensable for the p53-Mediated DNA
Authors
: Campaner S, Spreafico F, Burgold T, Doni M, Rosato U, Amati B, Testa G
Date
: 19 Aug 2011
Publication Details: Mol Cell. 2011 Aug 19;43(4):681-8

Title: microRNAs gain magnitude in muscle
Authors
: Crist CG, Buckingham M
Date
: 2009
Publication Details
: Cell Cycle. 2009 Nov 15;8(22):3627-8

Title: A PiggyBac-based recessive screening method to identify pluripotency regulators
Authors
: Guo G, Huang Y, Humphreys P, Wang X, Smith A
Date
: 2011
Publication Details
: PLoS ONE 6(4): e18189. doi:10.1371/journal.pone.0018189

Title: The Methyltransferase Set7/9 (Setd7) is dispensable for the p53-mediated DNA damage response in vivo
Authors
: Campaner S, Spreafico F, Burgold T, Doni M, Rosato U, Amati B, Testa G
Date
: 2011
Publication Details
: Molecular Cell 2011 Aug 19, 43(4): 681-88